2024
Journal - Research Article
Vaux, F., Parvizi, E., Duffy, G. A., Dutoit, L., Craw, D., Waters, J. M., & Fraser, C. I. (2024). First genomic snapshots of recolonising lineages following a devastating earthquake. Ecography. Advance online publication. doi: 10.1111/ecog.07117
Ara, M. G., McCulloch, G. A., Dutoit, L., Wallis, G. P., & Ingram, T. (2024). Genomics reveals repeated landlocking of diadromous fish on an isolated island. Ecology & Evolution, 14, e10987. doi: 10.1002/ece3.10987
Verry, A. J. F., Mas-Carrió, E., Gibb, G. C., Dutoit, L., Robertson, B. C., Waters, J. M., & Rawlence, N. J. (2024). Ancient mitochondrial genomes unveil the origins and evolutionary history of New Zealand's enigmatic takahē and moho. Molecular Ecology, 33, e17227. doi: 10.1111/mec.17227
Clark, A. C., Edison, R., Esvelt, K., Kamau, S., Dutoit, L., Champer, J., … Alexander, A., & Gemmell, N. J. (2024). A framework for identifying fertility gene targets for mammalian pest control. Molecular Ecology Resources, 24(2), e13901. doi: 10.1111/1755-0998.13901
2023
Journal - Research Article
Waters, J. M., Campbell, C. S. M., & Dutoit, L. (2023). Fish biogeography and hybridization: Do contemporary distributions predict introgression history? Evolution, 77(11), 2409-2419. doi: 10.1093/evolut/qpad147
van Galen, L. G., Orlovich, D. A., Lord, J. M., Nilsen, A. R., Dutoit, L., & Larcombe, M. J. (2023). Correlated evolution in an ectomycorrhizal host-symbiont system. New Phytologist. Advance online publication. doi: 10.1111/nph.18802
Dufresnes, C., Dutoit, L., Brelsford, A., Goldstein-Witsenburg, F., Clément, L., López-Baucells, A., … Goudet, J. (2023). Inferring genetic structure when there is little: Population genetics versus genomics of the threatened bat Miniopterus schreibersii across Europe. Scientific Reports, 13(1), 1523. doi: 10.1038/s41598-023-27988-4
Grosser, S., Dutoit, L., Foster, Y., Robertson, F., Fidler, A. E., Martini, D., Knapp, M., & Robertson, B. C. (2023). Genomic evidence of a functional RH2 opsin in New Zealand parrots and implications for pest control. New Zealand Journal of Zoology, 50(2), 341-349. doi: 10.1080/03014223.2022.2053554
Journal - Research Other
Dutoit, L., Mitchell, K. J., Dussex, N., Kemper, C. M., Larsson, P., Dalén, L., Rawlence, N. J., & Marx, F. G. (2023). Convergent evolution of skim feeding in baleen whales [Note]. Marine Mammal Science. Advance online publication. doi: 10.1111/mms.13047
Dutoit, L., & McCulloch, G. A. (2023). Fun in facets: A flexible new tool for population genomics in R. Molecular Ecology Resources. Advance online publication. doi: 10.1111/1755-0998.13773
Vaux, F., Dutoit, L., Fraser, C. I., & Waters, J. M. (2023). Genotyping-by-sequencing for biogeography. Journal of Biogeography, 50, 262-281. doi: 10.1111/jbi.14516
Conference Contribution - Verbal presentation and other Conference outputs
Alvarez-Costes, S., Baker, C. S., Constantine, R., Carroll, E., Dutoit, L., Ferreira, S., … Gemmell, N., Gillum, J., … Rayment, W., … Urban, L., & Alexander, A. (2023, August). Reference genomes, genome-wide heterozygosity, and historical demography of Hector's (Cephalorhynchus hectori hectori) and Māui (Cephalorhynchus hectori maui) dolphins. Verbal presentation at the Queenstown Molecular Biology (QMB) Genomics Satellite, Queenstown, New Zealand.
2022
Journal - Research Article
McCulloch, G. A., Foster, B. J., Dutoit, L., & Waters, J. M. (2022). Repeated alpine flight loss within the widespread New Zealand stonefly Nesoperla fulvescens hare (Plecoptera: Gripopterygidae). Insect Systematics & Diversity, 6(6), 1. doi: 10.1093/isd/ixac027
Campbell, C. S. M., Dutoit, L., King, T. M., Craw, D., Burridge, C. P., Wallis, G. P., & Waters, J. M. (2022). Genome-wide analysis resolves the radiation of New Zealand's freshwater Galaxias vulgaris complex and reveals a candidate species obscured by mitochondrial capture. Diversity & Distributions, 28, 2255-2267. doi: 10.1111/ddi.13629
Ragsdale, A., Ortega-Recalde, O., Dutoit, L., Besson, A. A., Chia, J. H. Z., King, T., Nakagawa, S., Hickey, A., Gemmell, N. J., Hore, T., & Johnson, S. L. (2022). Paternal hypoxia exposure primes offspring for increased hypoxia resistance. BMC Biology, 20, 185. doi: 10.1186/s12915-022-01389-x
Fraser, C. I., Dutoit, L., Morrison, A. K., Pardo, L. M., Smith, S. D. A., Pearman, W. S., Parvizi, E., Waters, J., & Macaya, E. C. (2022). Southern hemisphere coasts are biologically connected by frequent, long-distance rafting events. Current Biology, 32, 3154-3160. doi: 10.1016/j.cub.2022.05.035
McCulloch, G. A., Dutoit, L., Craw, D., Kroos, G. C., & Waters, J. M. (2022). Genomics reveals exceptional phylogenetic diversity within a narrow-range flightless insect. Insect Systematics & Diversity, 6(2), 5. doi: 10.1093/isd/ixac009
Rawlence, N. J., Salis, A. T., Spencer, H. G., Waters, J. M., Scarsbrook, L., Mitchell, K. J., … Dutoit, L., King, T. M., … Kennedy, M. (2022). Rapid radiation of Southern Ocean shags in response to receding sea ice. Journal of Biogeography, 49, 942-953. doi: 10.1111/jbi.14360
Babio, L., Lokman, P. M., Damsteegt, E. L., & Dutoit, L. (2022). Are cell junctions implicated in the regulation of vitellogenin uptake? Insights from an RNAseq-based study in eel, Anguilla australis. Cells, 11, 550. doi: 10.3390/cells11030550
Perry, B. J., Mohammadi Darestani, M., Ara, M. G., Hoste, A., Jandt, J. M., Dutoit, L., … Ingram, T., & Geoghegan, J. L. (2022). Viromes of freshwater fish with lacustrine and diadromous life histories differ in composition. Viruses, 14(2), 257. doi: 10.3390/v14020257
Parvizi, E., Dutoit, L., Fraser, C. I., Craw, D., & Waters, J. M. (2022). Concordant phylogeographic responses to large-scale coastal disturbance in intertidal macroalgae and their epibiota. Molecular Ecology, 31, 646-657. doi: 10.1111/mec.16245
Conference Contribution - Published proceedings: Abstract
Stubbs, A., Dutoit, L., Foster, Y., Grosser, S., Jenkinson, T., McKinlay, B., Robertson, F., … Robertson, B. (2022). A genomics approach to kea (Nestor notabilis) conservation management. Proceedings of the 11th Australasian Ornithological Conference. 41. Retrieved from https://aocauckland.blogs.auckland.ac.nz/
Prystupa, S., Dutoit, L., Foster, Y., Grosser, S., Robertson, F., Stubbs, A., … Robertson, B. (2022). Did the rodent eradication program impact the genetic health of an endemic bird species? A genomic investigation of the Lord Howe currawong. Proceedings of the 11th Australasian Ornithological Conference. 38. Retrieved from https://aocauckland.blogs.auckland.ac.nz/
Dutoit, L., Nadachowska-Brzyska, K., Smeds, L., Kardos, M., Gustafsson, L., & Ellegren, H. (2022). Estimating contemporary effective population size in an island population of collared flycatchers (Ficedula albicollis). Proceedings of the 11th Australasian Ornithological Conference. 48. Retrieved from https://aocauckland.blogs.auckland.ac.nz/
Conference Contribution - Verbal presentation and other Conference outputs
van Galen, L., Orlovich, D., Lord, J., Bohorquez, J., Nilsen, A., Summerfield, T., Dutoit, L., & Larcombe, M. (2022, May). Environment and host effects on New Zealand Nothofagus ectomycorrhizal fungal communities. Verbal presentation at the Fungal Network of New Zealand 35th New Zealand 'Virtual' Fungal Foray including the 20th Mycology Colloquium, [Online].
2021
Journal - Research Article
McCulloch, G. A., Guhlin, J., Dutoit, L., Harrop, T. W. R., Dearden, P. K., & Waters, J. M. (2021). Genomic signatures of parallel alpine adaptation in recently-evolved flightless insects. Molecular Ecology, 30, 6677-6686. doi: 10.1111/mec.16204
Foster, Y., Dutoit, L., Grosser, S., Dussex, N., Foster, B. J., Dodds, K. G., … Robertson, F., … Robertson, B. C. (2021). Genomic signatures of inbreeding in a critically endangered parrot, the kākāpō. Genes Genomes Genetics, 11(11), jkab307. doi: 10.1093/g3journal/jkab307
Nadachowska-Brzyska, K., Dutoit, L., Smeds, L., Kardos, M., Gustafsson, L., & Ellegren, H. (2021). Genomic inference of contemporary effective population size in a large island population of collared flycatchers (Ficedula albicollis). Molecular Ecology, 30, 3965-3973. doi: 10.1111/mec.16025
McCulloch, G. A., Foster, B. J., Dutoit, L., Harrop, T. W. R., Guhlin, J., Dearden, P. K., & Waters, J. M. (2021). Genomics reveals widespread ecological speciation in flightless insects. Systematic Biology, 70(5), 863-876. doi: 10.1093/sysbio/syaa094
McCulloch, G. A., Madeira, P. T., Makinson, J. R., Dutoit, L., Blair, Z., Walter, G. H., … Purcell, M. F. (2021). Phylogenomics resolves the invasion history of Acacia auriculiformis in Florida. Journal of Biogeography, 48, 453-464. doi: 10.1111/jbi.14013
Conference Contribution - Published proceedings: Abstract
Eda, A. R. A., Centeno, F., Bishop, P., Godfrey, S., Dutoit, L., Rand, C., Easton, L., & Stanton, J. (2021). Evaluation of DNA extraction kits for examining skin microbial composition of New Zealand native frog. Proceedings of the University of Otago Student Research Symposium: Te Wānaka Rakahau: Ākoka. (pp. 26). [Abstract]
Stubbs, A., Dutoit, L., Foster, Y., Robertson, F., Van Stijn, T., & Robertson, B. (2021). Genetics to inform conservation management of kea (Nestor notabilis) in New Zealand. Proceedings of the University of Otago Student Research Symposium: Te Wānaka Rakahau: Ākoka. (pp. 58). [Abstract]
Cadzow, M., Dutoit, L., Senanayake, D., Bixley, M., & Faya, N. (2021). Otago bioinformatics spring school. Proceedings of the eResearch NZ Conference. (pp. 18-19). Retrieved from https://www.eresearchnz2021.org.nz
Conference Contribution - Verbal presentation and other Conference outputs
Nadachowska-Brzyska, K., Dutoit, L., Smeds, L., Kardos, M., Gustafsson, L., & Ellegren, H. (2021, June). Estimating contemporary effective population size in an island population of collared flycatchers (Ficedula albicollis). Verbal presentation at the Virtual Evolution Conference, [Online].
2020
Journal - Research Article
Mugal, C. F., Wang, M., Backström, N., Wheatcroft, D., Ålund, M., Sémon, N., … Dutoit, L., … Ellegren, H. (2020). Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F1 hybrids. Genome Research, 31(12), 1727-1739. doi: 10.1101/gr.254508.119
Ruzicka, F., Dutoit, L., Czuppon, P., Jordan, C. Y., Li, X.-Y., Olito, C., … Connallon, T. (2020). The search for sexually antagonistic genes: Practical insights from studies of local adaptation and statistical genomics. Evolution Letters, 4(5), 398-415. doi: 10.1002/evl3.192
Young, M. J., Dutoit, L., Robertson, F., van Heezik, Y., Seddon, P. J., & Robertson, B. C. (2020). Species in the faeces: DNA metabarcoding as a method to determine the diet of the endangered yellow-eyed penguin. Wildlife Research, 47(6), 509-522. doi: 10.1071/wr19246
Parvizi, E., Fraser, C. I., Dutoit, L., Craw, D., & Waters, J. M. (2020). The genomic footprint of coastal earthquake uplift. Proceedings of the Royal Society of London: Series B, 287, 20200712. doi: 10.1098/rspb.2020.0712
Ingram, T., Dutoit, L., Mikheev, P., Khan, S., & Schallenberg, M. (2020). Phenotypic, ecological and genomic variation in common bully (Gobiomorphus cotidianus) populations along depth gradients in New Zealand's Southern Great Lakes. Canadian Journal of Fisheries & Aquatic Sciences, 77(10), 1678-1687. doi: 10.1139/cjfas-2020-0015
Padovan, A., Chick, R. C., Cole, V. J., Dutoit, L., Hutchings, P. A., Jack, C., & Fraser, C. I. (2020). Genomic analyses suggest strong population connectivity over large spatial scales of the commercially important baitworm, Australonuphis teres (Onuphidae). Marine & Freshwater Research, 71(11), 1549-1556. doi: 10.1071/MF20044
Donald, K. M., McCulloch, G. A., Dutoit, L., & Spencer, H. G. (2020). Population structure of the New Zealand whelk, Cominella glandiformis (Gastropoda: Buccinidae), suggests sporadic dispersal of a direct developer. Biological Journal of the Linnean Society, 130, 49-60. doi: 10.1093/biolinnean/blaa033
Peters, J. C., Waters, J. M., Dutoit, L., & Fraser, C. I. (2020). SNP analyses reveal a diverse pool of potential colonists to earthquake-uplifted coastlines. Molecular Ecology, 29, 149-159. doi: 10.1111/mec.15303
Journal - Research Other
Alexander, A., & Dutoit, L. (2020). Roe deer on ice: Selection despite limited effective population size through the Pleistocene. Molecular Ecology, 29, 2765-2767. doi: 10.1111/mec.15511
Conference Contribution - Published proceedings: Abstract
Dutoit, L. (2020). Sexual conflict in a shared genome [Invited]. Proceedings of the Genetics Otago (GO) Zoom Symposium. Retrieved from https://blogs.otago.ac.nz/go/2020-3/
Ragsdale, A. K., Dutoit, L., Besson, A. A., King, T., Gemmell, N. J., Hore, T., & Johnson, S. L. (2020). Paternal hypoxia exposure primes offspring for increased hypoxia resistance. Integrative & Comparative Biology, 60(Suppl. 1), (pp. E192). doi: 10.1093/icb/icaa006
2019
Journal - Research Article
Cole, T. L., Dutoit, L., Dussex, N., Hart, T., Alexander, A., Younger, J. L., … Ellenberg, U., … Mattern, T., … Waters, J. M. (2019). Receding ice drove parallel expansions in Southern Ocean penguins. PNAS, 116(52), 26690-26696. doi: 10.1073/pnas.1904048116
Rexer-Huber, K., Veale, A. J., Catry, P., Cherel, Y., Dutoit, L., Foster, Y., … Waters, J., & Robertson, B. C. (2019). Genomics detects population structure within and between ocean basins in a circumpolar seabird: The white-chinned petrel. Molecular Ecology, 28, 4552-4572. doi: 10.1111/mec.15248
McCulloch, G. A., Foster, B. J., Dutoit, L., Ingram, T., Hay, E., Veale, A. J., Dearden, P. K., & Waters, J. M. (2019). Ecological gradients drive insect wing loss and speciation: The role of the alpine treeline. Molecular Ecology, 28, 3141-3150. doi: 10.1111/mec.15114
Conference Contribution - Published proceedings: Abstract
Ragsdale, A., Dutoit, L., Besson, A., King, T., Gemmell, N., Hore, T., & Johnson, S. (2019). Paternal hypoxia exposure primes offspring for increased hypoxia resistance. Proceedings of the 16th Asian Conference on Transcription. (pp. 48-49). Retrieved from http://act2019.p.events4you.currinda.com/days/2019-12-02/
Cole, T., Dutoit, L., Dussex, N., Hart, T., Alexander, A., Frugone, M. J., … Ellenberg, U., … Mattern, T., … Waters, J. (2019). Receding ice drove rapid expansions in eight Southern Ocean penguins. Proceedings of the Genetics Society of Australasia (GSA) Conference. Retrieved from https://event.crowdcompass.com/gsa2019
Ragsdale, A., Dutoit, L., Chia, J., Gemmell, N., & Johnson, S. (2019). It's in your head: How echoes of the past shape future progeny. Proceedings of the Genetics Society of Australasia (GSA) Conference. Retrieved from https://event.crowdcompass.com/gsa2019
Foster, Y. A. L., Dutoit, L., & Robertson, B. C. (2019). Genomic architecture of inbreeding in all living adults of the critically endangered kākāpō parrot (Strigops habroptilus). Proceedings of the Genetics Society of Australasia (GSA) Conference. Retrieved from https://event.crowdcompass.com/gsa2019
Young, M. J., Robertson, F., Dutoit, L., Mattern, T., Seddon, P. J., Robertson, B. C., & van Heezik, Y. (2019). Evidence for declining diet quality of mainland yellow-eyed penguins (Megadyptes antipodes): Is this their final dive? Proceedings of the 10th International Penguin Conference (IPC10). (pp. 73). Retrieved from https://www.penguin-conference.com
Cole, T. L., Dutoit, L., Dussex, N., Hart, T., Alexander, A., Frugone, M. J., … Ellenberg, U., … Mattern, T., … Waters, J. M. (2019). Contrasting demographic histories between widespread and endemic penguin taxa. Proceedings of the 10th International Penguin Conference (IPC10). (pp. 39-40). Retrieved from https://www.penguin-conference.com
2018
Journal - Research Article
Dutoit, L., Mugal, C. F., Bolívar, P., Wang, M., Nadachowska-Brzyska, K., Smeds, L., … Ellegren, H. (2018). Sex‐biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome. Molecular Ecology, 27(18), 3572-3581. doi: 10.1111/mec.14789
Bolívar, P., Mugal, C. F., Rossi, M., Nater, A., Wang, M., Dutoit, L., & Ellegren, H. (2018). Biased inference of selection due to GC-biased gene conversion and the rate of protein evolution in flycatchers when accounting for it. Molecular Biology & Evolution, 35(10), 2475-2486. doi: 10.1093/molbev/msy149
Connallon, T., Olito, C., Dutoit, L., Papoli, H., Ruzicka, F., & Yong, L. (2018). Local adaptation and the evolution of inversions on sex chromosomes and autosomes. Philosophical Transactions of the Royal Society B, 373(1757), 20170423. doi: 10.1098/rstb.2017.0423
2017
Journal - Research Article
Dutoit, L., Burri, R., Nater, A., Mugal, C. F., & Ellegren, H. (2017). Genomic distribution and estimation of nucleotide diversity in natural populations: Perspectives from the collared flycatcher (Ficedula albicollis) genome. Molecular Ecology Resources, 17(4), 586-597. doi: 10.1111/1755-0998.12602
Dutoit, L., Vijay, N., Mugal, C. F., Bossu, C. M., Burri, R., Wolf, J., & Ellegren, H. (2017). Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting. Proceedings of the Royal Society B, 284(1849), 20162756. doi: 10.1098/rspb.2016.2756
Conference Contribution - Verbal presentation and other Conference outputs
Dutoit, L., Vijay, N., Mugal, C. F., Bossu, C. M., Burri, R., Wolf, J., & Ellegren, H. (2017, January). Co-variation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting. Verbal presentation at the 50th Population Genetics Group Annual Meeting (PopGroup 50), Cambridge, UK.
Awarded Doctoral Degree
Dutoit, L. (2017). Determinants of genomic diversity in the collared flycatcher (Ficedula albicollis) (PhD). Uppsala University, Uppsala, Sweden. Retrieved from http://uu.diva-portal.org/smash/record.jsf?pid=diva2%3A1150692&dswid=7366
2016
Journal - Research Article
Uebbing, S., Künstner, A., Mäkinen, H., Backström, N., Bolivar, P., Burri, R., Dutoit, L., … Ellegren, H. (2016). Divergence in gene expression within and between two closely related flycatcher species. Molecular Ecology, 25(9), 2015-2028. doi: 10.1111/mec.13596
Conference Contribution - Published proceedings: Abstract
Dutoit, L. (2016). Co-variation in levels of nucleotide diversity in the avian genome long after completion of lineage sorting. Proceedings of the 22nd European Annual Meeting for PhD Students in Evolutionary Biology (EMPSEB 22). (pp. 37). Retrieved from https://empseb22dotorg.wordpress.com
2015
Journal - Research Article
Witsenburg, F., Clément, L., López-Baucells, A., Palmeirim, J., Pavlinić, I., Scaravelli, D., … Dutoit, L., … Christe, P. (2015). How a haemosporidian parasite of bats gets around: The genetic structure of a parasite, vector and host compared. Molecular Ecology, 24(4), 926-940. doi: 10.1111/mec.13071
Burri, R., Nater, A., Kawakami, T., Mugal, C. F., Olason, P. I., Smeds, L., … Dutoit, L., … Ellegren, H. (2015). Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers. Genome Research, 25(11), 1656-1665. doi: 10.1101/gr.196485.115
Conference Contribution - Poster Presentation (not in published proceedings)
Dutoit, L. (2015, June). Guidelines for samping of genetic diversity based on whole-genome re-sequencing data from collared flycatchers (Ficedula albicollis). Poster session presented at the Evolution, Guarujá, Brazil.
Conference Contribution - Verbal presentation and other Conference outputs
Dutoit, L. (2015, September). Conservation of the genetic diversity landscape across two distantly related passerine species. Verbal presentation at the 21st European Annual Meeting for PhD Students in Evolutionary Biology (EMPSEB 21), Stirling, UK.
2014
Conference Contribution - Poster Presentation (not in published proceedings)
Dutoit, L., Vijay, N., Kawakami, T., Burri, R., Wolf, J., & Ellegren, H. (2014, January). Conservation of local levels of genetic diversity between two distantly related bird species. Poster session presented at the 47th Population Genetics Group Annual Meeting (PopGroup 47), Bath, UK.
